Chapter 1 looked at the supply constraints. Chapter 2 looked at the long-term price floor.
What we can say up to here is this: "chemical fertilizer is going to be expensive, and for a long time." Not a short-term shortage. A structural rise in price will continue over the coming years to decades.
What does this rise mean for the farmer on the ground?
The conclusion, stated plainly: industrial farming becomes economically unviable.
The income-and-cost structure of industrial farming
Industrial farming — the dominant style in postwar Japan — broadly works like this.
Cost side
- Chemical fertilizer (nitrogen, phosphate, potash)
- Pesticides
- Fuel (tractors, greenhouses)
- Seeds and seedlings
- Equipment depreciation
- Labor (including self-employed labor)
Sales side
- Rice, vegetables, fruit, and so on shipped to markets, JA / Zen-Noh (Japan Agricultural Cooperatives), direct sales outlets
- Prices set by supply and demand and by competition with imports
Profit equals sales minus cost. Of course.
On top of this comes the rising price of chemical fertilizer. Cost-side items rise structurally.
And the important point here is that fertilizer is not the only thing rising. The same structural pressure hits pesticides and other inputs — that is what we look at next.
It isn't only fertilizer rising — the triple risk on pesticides and inputs
The cost structure of industrial farming is not only chemical fertilizer. Pesticides and farm inputs rise and become hard to obtain under the same structural pressure. There are three reasons.
Risk 1: many pesticides contain phosphorus
This is easy to overlook, but many of today's main pesticides are phosphorus compounds.
- Organophosphate insecticides — malathion, fenitrothion, diazinon, chlorpyrifos, and so on. Most of Japan's representative insecticides are organophosphates.
- Glyphosate (Roundup) — the most widely used herbicide in the world. It contains a phosphonic acid group (a phosphate group) in its chemical structure, and its production requires phosphorus compounds.
- Glufosinate (Basta) — a herbicide with a phosphine group.
- Ethephon — a phosphonate-ester plant growth regulator (used to prevent fruit drop and to promote ripening).
- Some fungicides (fosetyl-class and others) are also phosphorus compounds.
So phosphate-fertilizer supply constraints directly propagate to pesticide manufacturing costs.
"Phosphate rock gets more expensive → fertilizer gets more expensive" is not the whole story. "Phosphate rock gets more expensive → glyphosate and organophosphate pesticides get more expensive too" is the structure.
The short-term (2027) and long-term (peak phosphorus) supply constraints we saw in Chapters 1–2 hit pesticide prices simultaneously.
Risk 2: production is heavily concentrated in India and China
World pesticide production is concentrated in India and China.
- China — the world's largest glyphosate producer (over 60% global share
[unverified]), and a major center for organophosphate pesticides. - India — the world's second-largest pesticide producer, with overwhelming share especially in generic pesticides.
- Japan imports much of its active ingredient (AI) supply via India and China.
The same geopolitical risk we saw in Chapter 1 for phosphate fertilizer also applies to pesticides.
- Chinese export controls: under the banner of national security, restrictions on chemical exports are expanding. Pesticides are no exception.
- India's own-country priority: India is also pursuing food self-sufficiency and may tighten pesticide exports.
- High energy prices: both countries use enormous energy in chemical manufacturing. Energy-price rises feed straight into cost.
- Tighter environmental regulation: in both China and India, environmental rules on chemical industries are tightening, capping production capacity.
Risk 3: Iran-related Middle East conflict and the Strait of Hormuz — logistics gridlock and raw-material depletion
The logistical paralysis of the Strait of Hormuz and the force-majeure declaration by Qatar Energy that we saw in Chapter 1 also affect pesticide imports. Marine shipment of chemicals goes through the same routes as fertilizer, and surging ocean freight and marine insurance feed directly into pesticide prices.
But the issue does not stop at higher shipping costs. The Iran war triggered by the late-February 2026 strike on Iran, the de facto closure of the Strait of Hormuz that followed, and Iran's full halt on petrochemical exports have, together, left the basic raw materials for pesticide manufacturing depleted at a global scale [source: Iran-war and pesticide supply risk PDF, IEA, Roland Berger, Eco-Business, IFPRI].
Disruption in basic chemicals — methanol, sulfur, naphtha
What is fatal for pesticide manufacturing is that the world trade in the following basic chemicals is thinning at the same time.
| Basic chemical | Share of world trade routed through the Middle East | Main use in pesticides / farm inputs | Global impact of supply disruption |
|---|---|---|---|
| Methanol | About 33% (one third) | Basic backbone for pesticide active ingredients (C1 source). Synthesis of intermediates for carbamate and organophosphate classes, etc. | Stalled active-ingredient synthesis in China and elsewhere. Sharp price rises driven by raw-material competition with paint and resin industries. |
| Sulfur | About 50% (close to half) | Raw material for sulfuric acid (essential for refining phosphate fertilizer), raw material for sulfur fungicides, sulfonation reactions in pesticide synthesis. | Surging sulfur prices. Difficulty of alternative sourcing pushes synthesis lines below profitability and into shutdown. |
| Natural gas | (140 billion cubic meters/day stranded around the Persian Gulf) | Main feedstock for ammonia synthesis (hydrogen and heat source). Foundation of nitrogen fertilizer (urea). | Historic surge in urea prices (US Gulf Coast spot at about US$700/ton, up over 30% from the start of the war). |
| Naphtha | Japan imports about 70% of its naphtha from the Middle East | Feedstock for aromatic organic solvents (xylene, toluene) used in emulsifiable concentrates (EC) (50–80% of formulation weight); various petrochemicals. | Mitsubishi Chemical lowered the operating rate at its Ibaraki ethylene plant; Idemitsu warned of possible halts at its Chiba and Yamaguchi plants; Sumitomo Chemical declared force majeure on methyl methacrylate. |
China is the world's largest buyer of methanol, and the risk of port stocks falling below "warning thresholds" is rising. China is one of the world's largest suppliers of pesticide active ingredients, and a methanol shortage inside China translates directly into higher AI prices and delayed deliveries for pesticide makers worldwide, including in Japan.
Beyond the surface phenomenon of high energy prices, the Strait-of-Hormuz closure is simultaneously thinning out the most basic carbon source (C1), sulfur, and hydrogen source for pesticide synthesis.
Pesticide categories that become hard to obtain — four classes
Under the influence of the Iran war, the pesticides at greatest risk of becoming extremely hard to obtain in Japanese agriculture fall into the following four categories.
Category 1: machine oil emulsion
A pesticide that uses the lubricating-oil fraction of petroleum (highly refined mineral oil) as its active component, physically blocking pests' (spider mites, scale insects) spiracles to suffocate them. It carries no chemical toxicity and therefore plays an extremely important role in organic and reduced-pesticide cultivation, especially in winter-dormancy treatment for fruit trees (citrus, apple, etc.).
- Dependent raw materials: mineral oil (lubricating-oil fraction), emulsifier
- Depletion mechanism: 70% of naphtha and crude oil imports come from the Middle East. Domestic refining stalls, fraction shortages strike directly.
- Impact on Japanese agriculture: a fatal blow to winter-dormancy spraying on fruit trees. With few alternatives, the cropping system takes a fatal hit — risk: extremely high.
Category 2: emulsifiable concentrates (EC) in general
A formulation in which a sparingly water-soluble active is dissolved in an organic solvent and stabilized with surfactant (emulsifier). It is widely used in the Japanese pesticide market. The formulation uses large amounts (50–80% of product weight) of petroleum-derived aromatic solvents such as xylene and toluene.
- Dependent raw materials: aromatic organic solvents (xylene, etc.), surfactants, active ingredients
- Depletion mechanism: shortages of xylene and toluene base solvents directly follow naphtha shortages. No matter how excellent the active-ingredient stock is, without solvent it is physically impossible to ship as a final product.
- Impact on Japanese agriculture: many vegetable and fruit-tree insecticides and fungicides are pulled from distribution — risk: extremely high.
Category 3: flowable concentrate (SC) and wettable powder (WP)
Formulations in which the active is uniformly dispersed in water using highly engineered surfactants. Many of these surfactants are non-ionic and anionic surfactants made from petrochemical derivatives such as ethylene oxide (EO) and propylene oxide (PO).
- Dependent raw materials: water, petroleum-based synthetic surfactants (dispersants), thickeners, active ingredients
- Depletion mechanism: lower operating rates at Japanese ethylene plants choke off EO/PO surfactants. Demand spikes as a substitute for emulsifiable concentrates, but the surfactant shortage is the bottleneck.
- Impact on Japanese agriculture: the substitute path away from emulsifiable concentrates also thins — risk: high.
Category 4: spreaders (adjuvants)
Auxiliary agents that improve spray efficiency and adhesion to leaf surfaces. Indispensable to almost all modern pesticides.
- Dependent raw materials: non-ionic and anionic surfactants, various solvents
- Depletion mechanism: absolute shortage of surfactants from the basic-petrochemicals shortage.
- Impact on Japanese agriculture: spray efficiency falls sharply, producing effectively poor performance — risk: high.
Active-ingredient synthesis thins at the same time
At the active-ingredient synthesis stage that precedes formulation, methanol and sulfur shortages strike directly.
- Carbamate insecticides: methanol derivatives (formaldehyde, methylamine) are essential intermediates.
- Many organophosphate pesticides: methanol and formaldehyde are used as C1 building blocks.
- Synthesis of intermediates for some herbicides: depends on methanol-derived reagents.
- Sulfone-class fungicides and herbicides (sulfonylurea herbicides, etc.): sulfur is essential to sulfonation reactions starting from sulfuric acid.
- Sulfur fungicides: sulfur itself is the raw material.
In a globalized supply chain where chemical raw materials are exported from the Middle East to Asia, processed into intermediates, and then built into final products around the world, outsourcing the risk is impossible (Roland Berger analysis). Primary-material shortages cascade through several production stages and ultimately produce a worldwide production crisis.
The "fertilizer shock" distorts pesticide demand — secondary propagation
On top of this, the historic surge in fertilizer prices is reshaping the world's planting mix, which in turn puts secondary pressure on pesticide procurement in Japan.
- In the United States and South America, planted area for corn and wheat — which consume large quantities of expensive (especially nitrogen) fertilizer — is forecast to shrink sharply in favor of large-scale conversion to soybeans, which fix nitrogen from the air via root-nodule bacteria and thus need much less nitrogen fertilizer
[source: IFPRI, Brazilian Institute of Agricultural Economics]. - Brazil also has a track record from past price spikes of cutting phosphate use by 12.4% and potassium use by 9.8%.
- As a result, world demand for soybean pesticides (glyphosate, glufosinate, various selective herbicides, fungicides for Asian soybean rust) surges.
While Chinese and Indian active-ingredient makers cut capacity under methanol and sulfur shortages, a worldwide scramble breaks out over the limited AI stocks. Japan's small and mid-size pesticide makers and Zen-Noh (JA) face the risk of being outbid in international markets for the active ingredients they need.
Japanese farmers are caught in a double bind: the physical constraint of stalled domestic manufacture of emulsifiable concentrates and machine oil emulsion under the naphtha shortage, and the international price spike of specific actives driven by global crop-mix shifts.
Five structural shocks — not a temporary price swing
To summarize, the pesticide-supply risk that the Iran war imposes on Japanese agriculture crystallizes as the following five structural shocks.
- Inputs that depend directly on machine oil emulsion and petroleum-refining fractions — fatal blow to winter-dormancy spraying on fruit trees.
- Various "emulsifiable concentrates (EC)" that rely heavily on aromatic organic solvents — even with active-ingredient stock, formulation halts.
- All pesticide formulations using petroleum-derived synthetic surfactants and emulsifiers (flowable concentrates, wettable powders, etc.) — auxiliaries deplete and the entire formulation supply chain cascades into dysfunction.
- Pesticide active ingredients synthesized from large amounts of methanol and sulfur (sulfuric acid) — surging cost and physical shortage of intermediates and AIs in carbamate, organophosphate, and sulfone classes.
- Specific pesticides whose demand surges due to "fertilizer-shock"-driven crop-mix shifts (soybean herbicides, fungicides, etc.) — procurement difficulty from being outbid internationally.
These are not temporary price fluctuations; they are a "structural shock" in which the geopolitical fragility built into a globalized supply chain has been exposed all at once (Gemini Deep Research).
The crisis has already moved off the chemical-plant pipework and onto the soil at the last line of defense — the agricultural production site. Japan's pesticide industry and farm producers are forced into a complete shift to fundamental crisis-management policy, on the assumption that the disruption of Middle-East-origin oil, natural gas, and basic chemicals will continue over the medium and long term.
The lethality risk: a single pesticide becoming unobtainable can wipe out a crop
So far the discussion has been about price rises. But industrial farming carries a risk far more serious than price rises.
The unavailability of a single specific pesticide can collapse the entire crop-production system.
This is not about prices. It is about not being able to grow that crop at all from that year on. There are several structural reasons.
Reason 1: the registration system limits "which pesticides can be used"
In Japan, the pesticides that can be used on each crop are legally registered. Unregistered pesticides cannot be used. For a given pest or disease on a given crop, often only a handful of pesticides are usable.
Examples:
- Rice: blast disease, sheath blight, planthoppers
- Apple: scab, alternaria leaf spot, codling moth
- Cucumber: powdery mildew, downy mildew
- Tomato: late blight, gray mold
- Cabbage: diamondback moth, cabbage white
For each, the number of effective registered pesticides is limited to a few. If the major one becomes unobtainable, control means run out.
Reason 2: collapse of resistance management
Pests and diseases acquire resistance when the same mode-of-action pesticide is used continuously. Modern agriculture therefore requires rotating pesticides with different modes of action (mode-of-action management under FRAC/IRAC/HRAC codes (Fungicide/Insecticide/Herbicide Resistance Action Committee)).
But:
If even one of the pesticides needed for rotation is missing, resistance management collapses. Continuous use of the remaining pesticides accelerates resistance, and the remaining pesticides also stop working. The result is catastrophic damage across the crop.
In other words, the loss of a single pesticide can chain into the loss of effectiveness of the others as well.
Reason 3: seed treatment chemicals run dry
Many crops are treated at the seed stage with seed treatment chemicals (fungicides, insecticides, nutrients). Untreated seed produces major drops in yield from poor germination and early disease, and in the worst case fails to germinate at all. Seed treatment chemicals are also largely produced in China and India, and carry the same geopolitical risk.
Reason 4: loss of selective herbicides
If selective herbicides (those that kill weeds but spare the crop) cannot be obtained, competition between weeds and crop wipes out yields. Japan's conventional paddy-rice and field crops are especially dependent on herbicides. Maintaining production scale with hand-weeding is, on labor grounds, impossible.
"Price hike" and "wipeout" — two risks of different character hit at the same time
So in industrial farming:
| Risk | Character | Impact |
|---|---|---|
| Chemical-fertilizer price rise | Slow-grinding economic pressure | Profit compression → scale-down → exit |
| Specific-pesticide price rise | Same | Same |
| Single-pesticide unavailability | A sudden shock | Production of that crop disappears (from that year) |
If a specific pesticide goes out of production in China or India, or if shipping via the Strait of Hormuz stalls for an extended period, production of any crop that depended on it can collapse from that year on.
This is not at the level of "fertilizer is dearer, so profit dips a little." The disappearance of a single pesticide can erase production of that crop entirely. Industrial farming is an extremely fragile system that depends on a chain of chemical inputs.
And this can happen before fertilizer runs out physically. Pesticides may produce a fatal problem before fertilizer does. Phosphate fertilizer has a stockpile (about 2.4 months) and you can choose to halve the dose and endure. But a specific pesticide cutoff is binary (a substitute is registered or it isn't), with no buffer.
Natural farming and regenerative agriculture do not have this fragility
By contrast, natural farming and regenerative agriculture do not have "dependence on a specific pesticide" to begin with.
- Multi-species cover cropping (AMF + PSB in Chapter 5; functional-group polycultures in Chapter 7) suppresses pest and disease outbreaks at the source.
- Biological control via the conservation and attraction of natural enemies.
- Selection of resistant local varieties.
- Keeping living roots in the ground to promote plant defense enzymes and secondary metabolites (Chapter 5).
Industrial farming is a system where "when the supply chain for a specific pesticide breaks, it's over." Regenerative agriculture is a system that "doesn't depend on any specific pesticide to start with." Under supply-chain rupture, the latter is far more robust.
Other inputs are under the same pressure
Farm inputs other than pesticides sit under the same pressure.
- Greenhouse materials (PE, PVC): petrochemicals → tied to energy prices.
- Tractor fuel (diesel, gasoline): tied directly to Middle East developments.
- F1 seeds: many imported from global seed companies, bred on the assumption of chemical fertilizer (covered in Chapter 7).
- Potting soil, seedling trays, pots: largely plastic and chemical, energy-dependent.
- Packaging: petrochemical.
Triple pressure on the cost structure
Lined up, the cost structure of industrial farming is under a triple, simultaneous pressure.
| Category | Main drivers | Where it is detailed |
|---|---|---|
| Chemical fertilizer | Phosphate rock, sulfur, natural gas, Strait of Hormuz | Chapters 1–2 |
| Pesticides | Phosphorus compounds (organophosphates, glyphosate, etc.), Chinese/Indian production, Strait of Hormuz | This section |
| Inputs, fuel, seed | Petrochemicals, imported F1 seed, energy-linked | Partly Chapter 7 |
"Just think about fertilizer" is wrong. Every cost element of industrial farming is being pushed in the same direction at the same time. By the time fertilizer is unavailable, pesticides and inputs are equally thinned.
This means that justifying transition "on fertilizer alone" is not enough. The whole stack of chemical and petroleum-derived inputs that sustains industrial farming is thinning together, and so the move toward reducing chemical inputs themselves becomes rational from any entry point.
Selling prices cannot be raised
In a normal business, when costs go up, you raise prices. That is the basic motion of a market economy.
But agriculture cannot do this. Why?
Because it is in direct competition with imported produce.
Much of what reaches Japanese tables is already in price competition with imports.
- Wheat self-sufficiency is about 10–20%
[unverified]. - Soybean self-sufficiency is about 6–7%
[unverified]. - Feed grain self-sufficiency is about 20% or less
[unverified]. - Vegetable self-sufficiency is about 80%, but processed and frozen products lean heavily on imports.
When domestic farmers try to pass cost increases through to prices, consumers pick the cheaper imports. Supermarkets stock the cheaper imports. Raising the price of domestic produce means it stops selling on the market.
Here is agriculture's distinctive structure.
Costs rise on domestic conditions; selling prices are set on the world market. This vise is the essential weakness of industrial farming.
What "the more you grow, the deeper the loss" looks like in numbers
MAFF estimates of fertilizer-cost pressure by crop
Data the Ministry of Agriculture, Forestry and Fisheries (MAFF) has worked up using its model-management framework clearly back up the cost-structure deterioration [source: MAFF "Surging Fertilizer Raw Materials," asis1.pdf].
| Crop | Increase in fertilizer cost per 10 ares (1,000 m²) (forecast) | Fertilizer-cost share of operating expense (historical) | Fertilizer-cost share of operating expense (forecast) |
|---|---|---|---|
| Paddy rice (transplanted) | About +¥6,000 | 10.0% | 16.9% |
| Cabbage | (linked to paddy rice) | 8.7% | 14.8% |
| Tomato (hydroponic) | About +¥130,000 | 4.2% | (large proportional rise) |
| Cucumber | About +¥130,000 | 3.9% | (large proportional rise) |
| Rose / chrysanthemum | About +¥130,000–180,000 | 2.1–3.4% | (large proportional rise) |
| Greenhouse mandarin / greenhouse fig | About +¥50,000–90,000 | n/a | (large proportional rise) |
In land-using crops like paddy rice and cabbage, the share of fertilizer in operating expense rises sharply. Paddy rice jumps from 10.0% to 16.9%, cabbage from 8.7% to 14.8%, pushing total operating expense strongly upward.
More serious is the absolute cost increase in protected horticulture and hydroponic systems. In hydroponic tomato and cucumber, fertilizer cost per 10 ares rises by about ¥130,000, and in flower crops such as rose and chrysanthemum the increase reaches ¥130,000 to ¥180,000.
Paddy-rice simulation
To make it concrete: per 1 tan (≈ 10 ares, ≈ 1,000 m²) of paddy rice, the structure looks like this.
| Item | Normal | Fertilizer 2× |
|---|---|---|
| Chemical fertilizer | ¥15,000 | ¥30,000 |
| Pesticides | ¥10,000 | ¥10,000 |
| Fuel | ¥8,000 | ¥10,000 |
| Seed and miscellaneous | ¥10,000 | ¥10,000 |
| Equipment depreciation | ¥20,000 | ¥20,000 |
| Self-employed labor | ¥30,000 | ¥30,000 |
| Total cost | ¥93,000 | ¥110,000 |
| Yield (brown rice) | About 9 hyō (≈ 60kg) (540 kg) | About 9 hyō (540 kg) |
| Sales (¥15,000 / hyō) | ¥135,000 | ¥135,000 |
| Profit | +¥42,000 | +¥25,000 |
When fertilizer doubles, profit compresses from ¥42,000 to ¥25,000; at 3× or 4×, profit disappears entirely or turns negative. MAFF's official estimates likewise conclude bluntly that "with no expectation of producer-price increases, these higher operating expenses translate directly into lower income". The more a crop depends on purchased inputs, the more it is hit head-on by global inflation, and the more endangered the business becomes.
That is at fertilizer "2×". On the arguments of Chapters 1 and 2, by 2026–2027 it may not stop at 2×. At 3× or 4×, profit is gone. It sinks into negative territory.
And "just use less fertilizer" doesn't work either. Cutting chemical fertilizer drops yield in the short run. Conventional farming is designed around chemical fertilizer, so halving it cuts yield substantially (because the soil ecosystem has not yet recovered).
So once you enter an era of rising fertilizer prices while still on a chemical-fertilizer-dependent farming style:
- Use fertilizer → cost eats profit
- Cut fertilizer → yield drops and profit disappears
Either way, profit cannot be secured. The more you grow, the deeper the loss — that is the structure that emerges.
Scaling up doesn't solve it
"Just go bigger; mechanization brings efficiency" — that was the mainstream prescription of postwar agricultural policy.
But under surging phosphate-fertilizer prices, scaling up means scaling up costs. A farmer who cultivates 10 tan buys 10× the fertilizer of someone with 1 tan. The price-rise hit is also 10×.
The "unit cost goes down because we're bigger" effect rarely shows when fertilizer — a variable cost — is surging.
Abandoned farmland accelerates
If profit is not there, what do farmers do? They quit. That is a rational choice.
Japan's abandoned farmland has long been expanding.
- 2000: about 210,000 ha
- 2020: about 420,000 ha
[unverified: exact figure and year] - 2026: still expanding
Main reasons:
- Aging and lack of successors
- Long-term low rice prices
- Unfavorable conditions in mountainous areas
On top comes the structural surge in fertilizer prices.
More farmers will choose: "if it doesn't pay either way, I quit." Especially the younger generation that hasn't recovered its investment in machinery, part-time farmers, and farms in mountainous areas.
Once the income statement of industrial farming breaks down, the weakest operations exit first. The remaining farmers face the same call sooner or later as costs continue to rise.
This is not moralizing. It is farmland being abandoned as an output of cost-and-revenue arithmetic.
Subsidies have only limited reach
"Government subsidies will support it" — this is one possible reaction. Indeed, the position of figures like Suzuki Nobuhiro that we touched on in Chapter 1 calls for stronger government support.
But subsidies have limits.
Fiscal constraints
If fertilizer doubles or triples, the subsidy must double or triple. Japan's agriculture budget is limited. It competes for resources with pensions, healthcare, and defense. Dramatic increases are politically difficult.
Limits of price suppression
Even if subsidies cut farmer costs, the absolute supply of fertilizer doesn't grow. As Chapter 1 showed, China's export controls, sulfur supply constraints, and the PFAS issue cannot be solved with money. If money could buy the goods, the problem wouldn't exist.
The import-competition constraint
Even if you subsidize down domestic produce prices, there are limits to competing with countries that produce cheaply on the world market (US, Brazil, Australia, Eastern Europe). Scale, climate, and wage structures are different.
Subsidies can be a "buffer for the transition." They cannot be a "way to keep the structure of industrial farming running."
"Raise the food self-sufficiency rate" is not the answer
At this point a familiar argument shows up: raise the food self-sufficiency rate.
"Japan's self-sufficiency is low; we should raise it." Emotionally, the case is understandable. But, looked at coolly, it is not an answer.
Chemical-fertilizer self-sufficiency is essentially zero. Even if you grow more wheat or soybeans and lift the food self-sufficiency rate, if it's supported by imported fertilizer, the bottleneck just shifts from food to fertilizer.
To raise food self-sufficiency, you have to raise fertilizer self-sufficiency. But, as Chapters 1 and 2 showed, fertilizer cannot be made self-sufficient at the structural level.
The argument "raise the self-sufficiency rate," once you look at the fertilizer reality, is unachievable while industrial farming stands as it is. That is the hard conclusion.
The plunge in fiscal year 2022 (Reiwa 4) — down 5 points
The "fertilizer paradox" point above is borne out — and shown more starkly — by the latest MAFF self-sufficiency statistics [source: "On Food Self-Sufficiency Rate and Food Self-Sufficiency Potential Indicator for Fiscal Year 2022 (Reiwa 4)," Minna no Nōgyō Hiroba].
- The food self-sufficiency rate on a value basis for fiscal year 2022 (Reiwa 4) fell a sharp 5 points from the previous year, down to 58%.
- The food domestic-production rate on a value basis (which excludes feed self-sufficiency) likewise fell 4 points to 65%.
What matters is that this sudden fall in self-sufficiency was not caused by a sudden loss of domestic farmland or a dramatic crop failure. According to the government's analysis, the main cause was that, although the physical volume of food imports was about the same as the previous year:
- Rising international grain prices
- Surging input prices for feed, fertilizer, fuel
- Higher logistics costs
- A weak yen behind a substantial expansion of total import value
drove the result. In other words, the relative economic value of domestically produced agricultural goods was diluted by cost inflation in imported inputs and food, and the value-based self-sufficiency rate fell. This is direct evidence that domestic agricultural production has become a complete hostage to global cost swings.
Food self-sufficiency potential indicator — rice/wheat-centered planting cannot supply enough nutrition
The vulnerability of food security on a calorie basis is also striking. According to the Food Self-Sufficiency Potential Indicator for fiscal year 2022, even in the extreme simulation of using domestic farmland to its maximum and shifting wholesale to high-calorie crops:
| Planting pattern | Calories per person per day available (estimated) | Change from previous year |
|---|---|---|
| Rice/wheat-centered | 1,720 kcal | Down from 1,746 kcal |
| Tuber/potato-centered | 2,368 kcal | Down from 2,421 kcal |
Set against the estimated energy requirement (generally 2,000–2,400 kcal), a realistic rice-and-wheat-centered shift cannot even secure the calories needed to keep the population alive; only the extreme tuber/potato-centered shift (2,368 kcal) reaches the requirement — a critical situation.
And the formula for "self-sufficiency potential" itself rests on the unrealistic premise that the chemical fertilizer and pesticides needed to achieve high yields can be procured without limit, just as in normal times. If geopolitical crisis halts urea imports from China and crude-oil imports from the Middle East, then no matter how much farmland is converted to tubers and potatoes, achieving the theoretical 2,368 kcal becomes physically impossible.
A self-sufficiency-rate debate that ignores the origin of the inputs is a deception.
"Total abandonment of industrial farming" is also to be avoided — but precision agriculture is not a fundamental answer
A careful caveat is needed here.
The argument of this chapter should not be read as "a denial of chemical fertilizer, pesticides, and modern farming technology themselves." That would be a different extreme, with a real risk of slipping into anti-technology.
In fact, this chapter itself acknowledges: "if you cut chemical fertilizer, until the soil ecosystem recovers, you induce a short-term yield collapse." In a country like Japan, with high population density and limited flatlands, an abrupt rejection of conventional farming and a system-wide shift to alternative methods without sufficient scientific grounding carries the risk of manufacturing a serious food crisis (famine).
Precision agriculture is "marginal optimization within a broken paradigm"
As a rescue for industrial farming, precision agriculture is often proposed.
- Variable-rate application: satellite imagery, drones, and soil sensors give local diagnoses, and chemical fertilizer is applied where and how much is needed.
- Slow-release synthetic fertilizers and biostimulants: improve uptake efficiency to cut NPK input.
- AI early detection of pests and diseases, with localized pesticide spraying.
These do reduce required NPK input per hectare by about 20–30%. But they cannot be positioned as a "third way" or a "fundamental answer." Three reasons.
Reason 1: physical supply-chain constraints still bind
The coating material on slow-release fertilizers (coated fertilizers) depends on fossil-fuel inputs like naphtha, and its main raw materials — phosphate rock, urea, and the like — are still imported. Cutting input by 30% leaves the remaining 70% still coming from foreign rock, oil, and natural gas.
The Strait-of-Hormuz logistical paralysis from Chapter 1, China's halt on exports, Qatar's force-majeure declaration — these cannot be sidestepped by precision-agriculture efficiency. The design preserves the very structure of dependence on external resources.
Static profit forecasts based on past market data break down the moment physical supply-chain rupture occurs.
Reason 2: a permanent cost of platform-operator extraction remains
Adopting biostimulants and precision-agriculture sensors generates not just initial capex, but ongoing purchases of dedicated inputs and system-usage fees (cloud-service fees, data-analysis fees, royalties on patented inputs, etc.).
This is a structure that keeps depending on specific vendors and cloud ecosystems, eroding production-side autonomy and permanently squeezing the final profit margin. Cut chemical-fertilizer cost by 30% and risk having even more taken back under another label.
Replacing "dependence on chemical fertilizer" with "dependence on platform operators" — that is not a structural solution.
Reason 3: cost disadvantage versus "biological mining"
A precision-agriculture model that keeps inputting expensive resources (precision-engineered fertilizers, sensors, AI analytics) cannot beat, on cost, a model that draws out the soil's own autonomous processing capacity.
| Item | Slow-release / precision agriculture | Biological mining (mycorrhizal fungi + accumulated phosphate) |
|---|---|---|
| Operating cost | Extremely high (external inputs, fuel, renewals, license fees) | Near zero (sunlight, atmospheric CO2, seed) |
| System structure | Externally dependent, tightly coupled | Autonomous, loosely coupled (direct communication between environment and plants) |
| Fault tolerance | Fragile against physical supply-chain rupture | Resilient against environmental and material shortages |
| Information processing | Reactive control via sensors and algorithms | Real-time optimization via the mycorrhizal network |
As Chapter 5 will show, a large stock of accumulated phosphorus (legacy phosphorus) is already fixed in the soil. Arbuscular mycorrhizal fungi (AMF) receive carbon (photosynthate) from plants — increased under high CO2 — and dissolve accumulated phosphate and various minerals in the soil, returning them to the plant.
In addition, by selecting crops with weed-like vitality and environmental adaptability — Trombetta di Albenga (Trombetta squash) (the elongated squash family), heirloom root vegetables and millets — and direct-seeding them at scale, the input of human and material resources can be minimized.
Precision agriculture using expensive synthetic inputs has the design philosophy of "computing the deficit and supplying it from outside, again and again," and structurally cannot reduce running costs to zero. The most waste-free cost structure is realized by treating the symbiotic relationship between plants and microbes as the execution processor.
The role of precision agriculture: a transitional bridge
That said, completely rejecting precision agriculture is also extreme.
With the right transition through multi-species cover cropping, the soil recovers in three years; even so, during those three years you want to use the limited chemical fertilizer at maximum efficiency. Precision agriculture functions as a bridge tool that manages the pace of transition while allocating limited fertilizer locally and optimally.
Roles, sorted out:
- Precision agriculture: a bridge over the transition (years to a decade or so). Manages the pace at which chemical fertilizer is removed, and finally hands off to the autonomous system.
- Biological mining: the destination, an autonomous system. Long-term, drives input toward zero; runs on the symbiosis among soil, microbes, and crops.
These are not opposing options; they are a division of roles along the time axis. But mistaking "precision agriculture as the destination" leaves you trapped forever in the supply-chain constraint.
Three extremes and "the middle path" (correcting the position of precision agriculture)
To sum up, the extremes to avoid are three.
- Continue conventional farming as is: the income statement collapses.
- Aim for full self-sufficiency: neither fertilizer nor land is sufficient.
- Total abandonment of industrial farming (immediate transition): short-term yield collapse triggers a food crisis.
The middle path (the realistic answer):
- Destination: biological mining (mycorrhizal fungi + accumulated phosphorus + resilient crops).
- Transition (years to a decade or so): use precision agriculture as a limited "bridge" to step down chemical fertilizer.
- Imports: during transition, supplement grain, beans, and pasture from the US, Ukraine, and elsewhere.
- Policy: use subsidies as a transition buffer, in limited fashion.
"Industrial farming cannot stand" and "abandon industrial farming completely" are different propositions. This series argues for the former; it does not subscribe to the latter. Yet precision agriculture is, finally, a bridge — not the destination.
The path of "conventional farming as before" is closed
Pulling it together:
- Chemical fertilizer surges and stays elevated long-term (Chapters 1 and 2).
- Cost rises cannot be passed through to selling prices (because of import competition).
- Scaling up is not a solution (variable cost rises linearly).
- Subsidies have only limited reach.
- Calls to raise food self-sufficiency don't work as long as fertilizer depends on foreign sources.
- However, "complete abandonment" is also wrong — it triggers a food crisis.
- Precision agriculture is effective as a transitional bridge but is not the destination (it preserves the external-dependence structure and merely substitutes platform-operator dependence for chemical-input dependence).
- The destination is biological mining: an autonomous system in which mycorrhizal fungi dissolve accumulated phosphorus and resilient crops minimize external input.
In short, the path of "conventional farming as before" is economically closed. But the "stop everything" path is impossible, because it cannot support the population. The realistic answer is a combination of efficiency, natural farming, and imports.
When to decide — transition to regenerative agriculture
Now we can connect the time-axis diagnosis from Chapter 2 to the argument of this chapter.
As Chapter 2 showed:
In 2027, phosphate fertilizer becomes hard to obtain in Japan (short term, in front of us). The depletion of phosphorus resources is also serious in the long run (peak phosphorus around 2033, structural, irreversible).
And as this chapter has shown:
If chemical fertilizer no longer arrives, conventional farming cannot continue, even if you want it to. Industrial farming does not "choose" to end; it ends structurally and automatically.
Tie the two together and the conclusion is one.
So decide, now, to transition to regenerative agriculture.
"Wait" is not a choice that exists
Why decide "now"? The reason is the time axis.
- The 2027 fertilizer shortage is next year. There is almost no slack.
- However, with multi-species cover cropping (grasses + legumes + resilient crops + diverse cover crops), the soil microbiome recovers in roughly three years.
- Pulling chemical fertilizer alone out of a monoculture does indeed cause yield collapse, but with the right transition method, that can be avoided (detailed in Chapters 5–8).
- During the transition, food supply is supplemented by imports from regenerative-agriculture sources and by precision agriculture as a bridge.
"Short-term yield collapse" is not an unavoidable fate; it depends on the method of transition. Multi-species cover cropping that rapidly establishes the mycorrhizal network and rhizobial symbiosis mobilizes legacy phosphorus and recovers in three years. Gabe Brown, Christine Jones, and Allan Savory have already demonstrated this (Chapters 5–6).
In other words:
Start moving now, and it stands up in three years. But "wait until fertilizer stops arriving and then think" does not give you those three years. The decision is now; the start is right now.
What the decision actually means
What does "decide to transition to regenerative agriculture" mean concretely?
- Domestic: start, on a 5–10 year plan, the staged transition from conventional farming to regenerative agriculture (biological mining).
- Transition (years to a decade or so): use precision-agriculture techniques as a bridge, but make clear that the destination is biological mining.
- Imports: during the transition, supplement food supply by promoting regenerative agriculture internationally and importing from the resulting redistributed world supply network.
- At the personal/household level: balcony gardens, citizen allotments, home gardens — start small first. The transition begins not by waiting for the government but by the decisions of individuals and families.
This is not moralizing. It is the only realistic path indicated by the three vectors traced in Chapters 1–3:
- Economy (the structural surge in chemical fertilizer)
- Physics (depletion of phosphorus resources, the permanent cost of declining ore quality)
- Time (the 2027 fertilizer shortage and the years required for soil recovery).
The role of the chapters that follow
The substance of the decision will be assembled in the chapters that follow.
- Chapter 4: A realistic position — avoiding the three extremes and presenting the strategy of "domestic transition + international promotion + import supplementation."
- Chapter 5: Why regenerative agriculture works — the science of biological mining.
- Chapter 6: CO2 as a tailwind.
- Chapter 7: How to implement — the one-tan farmer, abandoned farmland, balcony gardens.
- Chapter 8: Operating principles — no-till, no-weeding, saving your own seed.
Decide in Chapter 3, concretize in the chapters that follow. That is the structure of the series as a whole.
References
Government and statistics
- MAFF "Surging Fertilizer Raw Materials" (asis1.pdf) — fertilizer-cost pressure estimates by crop, with operating-expense ratios based on the model from the 2005 Heisei 17 Agricultural Comprehensive Experiment Station Planning and Extension Division and equivalents.
- "On Food Self-Sufficiency Rate and Food Self-Sufficiency Potential Indicator for Fiscal Year 2022 (Reiwa 4)" — Minna no Nōgyō Hiroba (jeinou.com) — value-based food self-sufficiency rate 58%, food self-sufficiency potential indicator 1,720 / 2,368 kcal.
Pesticide and input structural risk
- Chemistry and pesticide-science literature on the chemical structure of pesticides containing phosphorus compounds (organophosphate insecticides, glyphosate, glufosinate, ethephon, etc.).
- Industry reports on Chinese and Indian pesticide-production share (CCM Data, Phillips McDougall, Agbiochem, etc.).
- Reporting on Chinese export-control trends for chemicals.
- MAFF statistics on Japan's import dependence for pesticide active ingredients.
- Reporting on chemical shipments via the Strait of Hormuz, marine insurance, and freight impacts.
Iran war, Strait of Hormuz closure, and pesticide-supply risk (Gemini Deep Research, "Iran-war and pesticide-supply risk PDF")
- World Economic Forum, "Beyond oil: 9 commodities impacted by the Strait of Hormuz crisis" (April 2026) — world-trade share of basic chemicals via the Strait of Hormuz (methanol about 33%, sulfur about 50%).
- The Economic Times, "Global chemical supply chains face disruption as Iran suspends all petrochemical exports" — Iran's full halt of petrochemical exports.
- Discovery Alert, "Iran Halts Petrochemical Exports Amid Regional Crisis — 2026 Framework."
- Echemi, "Iran Fully Halts Petrochemical Exports as the Middle East Supply System Faces Restructuring."
- Roland Berger, "Strait of Hormuz: Global supply chain at risk" — the structural fragility of global supply chains.
- S&P Global, "Credit FAQ: What The Middle East Conflict Means For The Asia-Pacific Chemicals Industry."
- Echemi, "Middle East Conflict Pushes Up Oil Prices as More Than 100 Chemical Raw Materials Rise in Concentration."
- ChemNet News, "Mitsubishi Chemical and Mitsui Chemical Lead Production Cuts as Naphtha Crisis Devastates Japan's Chemical Industry Chain" — the lower operating rate at Mitsubishi Chemical's Ibaraki ethylene plant.
- Japan Times, "Japan walks tightrope to keep ethylene plants running amid Middle East crisis" — possible halt at Idemitsu's Chiba and Yamaguchi plants; force majeure declared by Sumitomo Chemical on methyl methacrylate.
- Agenzia Nova, "Japan's petrochemical industry cuts production in response to Gulf crisis."
- Eco-Business, "The war in Iran could create a fertiliser shock, risking global food prices and farming" — UN WFP estimate of up to 45 million people at food insecurity risk.
- IFPRI, "The Iran war's impacts on global fertilizer markets and food production" — estimate that Brazil's urea imports could fall up to 27.3%, plus US/South America corn-to-soybean acreage shift forecasts.
- Literature on resilience and alternative-feedstock strategies from Shin Nihon Rika, Nippon Shokubai / E-TEC, MB Chemicals, and others (biomass-derived alternative additives, the state and challenges of green-ammonia expansion).
Basis for the four pesticide categories that become hard to obtain
- Machine oil emulsion — dependence on mineral oil (lubricating-oil fraction); scarcity of alternatives in fruit-tree winter-dormancy spraying.
- Emulsifiable concentrate (EC) — the formulation engineering in which aromatic organic solvents (xylene, toluene) make up 50–80% of formulation weight.
- Flowable concentrate (SC) and wettable powder (WP) — dependence on EO/PO-class surfactants.
- Spreaders (adjuvants) — supply constraints on raw materials for non-ionic and anionic surfactants.
- The role of methanol (C1 source) and sulfur (sulfuric acid) in the active-ingredient synthesis of carbamate, organophosphate, and sulfone-class pesticides.
The "fertilizer shock" causing world crop-mix shifts and pesticide-demand distortion
- Brazilian Institute of Agricultural Economics and IFPRI on nitrogen-fertilizer import dependence (Argentina 58.2%, Brazil 92.5%) and corn-to-soybean acreage shift forecasts.
- Outbidding-risk in international markets as world demand for soybean pesticides (glyphosate, glufosinate, selective herbicides, fungicides for Asian soybean rust) surges.
Resistance management and the risk of single-pesticide loss
- FRAC (Fungicide Resistance Action Committee) codes — classification of fungicide modes of action.
- IRAC (Insecticide Resistance Action Committee) codes — classification of insecticide modes of action.
- HRAC (Herbicide Resistance Action Committee) codes — classification of herbicide modes of action.
- The Agricultural Chemicals Control Law and MAFF guidelines on Japan's crop-by-crop pesticide-registration system.
- Materials on seed treatment chemicals (fungicides, insecticides) from various seed companies and pesticide makers.
Precision agriculture / advanced agricultural models
- Variable-rate application, slow-release synthetic fertilizers, biostimulants, AI pest and disease detection — precision-agriculture literature from various countries.
Biological mining and regenerative agriculture
- Gabe Brown (North Dakota) — integrated management of no-till, cover crops, and rotational grazing; lifting SOM from 1.7% to 11%.
- Christine Jones, "Light Farming" (2018) — the liquid-carbon pathway theory.
- Allan Savory, "Holistic Management" — livestock-management data from holistic management (80% reduction in mother-cow mortality, 2.5× milk productivity).